Import/export

import()

Import

export()

Export

R data

assignAndSaveData()

Assign and save data

loadData()

Load data

loadDataAsName()

Load data as name

loadRemoteData()

Load remote data

saveData()

Save data

File transfers

cacheURL()

Download and cache a file using BiocFileCache

getURLDirList()

Get remote URL directory listing

localOrRemoteFile()

Dynamically handle a local or remote file path

transmit()

Transmit files from a remote FTP server

Coercion

as.DataFrame()

Coerce to data frame

as.SummarizedExperiment()

Coerce to summarized experiment

as.data.frame()

Coerce to data frame

as.data.table()

Coerce to data table

coerceToList()

Coerce to list

as_tibble(<DataFrame>) as_tibble(<IRanges>) as_tibble(<GenomicRanges>)

Coerce to tibble

Data modification and sanitization

atomize()

Atomize

decode()

Decode column data that uses run-length encoding

droplevels()

Drop unused levels from factors

encode()

Encode using run-length encoding

factorize()

Factorize

matchRowNameColumn()

Match row name column

metadata2() `metadata2<-`()

Metadata

naStrings

NA strings

removeNA()

Remove rows and columns containing only NA values

sanitizeNA()

Sanitize NA values

sanitizePercent()

Sanitize percentage